Links

KaPPA-View Papers

  • Sakurai N, Ara T, Ogata Y, Sano R, Ohno T, Sugiyama K, Hiruta A, Yamazaki K, Yano K, Aoki K, Aharoni A, Hamada K, Yokoyama K, Kawamura S, Otsuka H, Tokimatsu T, Kanehisa M, Suzuki H, Saito K and Shibata D. (2011) KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data. Nucleic Acids Research, 39, D677-684 [Journal Site]
  • Ogata Y, Sakurai N, Provart NJ, Steinhauser D and Krall L (2008) Bioinformatics Tools to Discover Co-Expressed Genes in Plants. In Kahl G and Meksem K eds, The Handbook of Plant Functional Genomics: Concepts and Protocols, pp. 309-335, WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim [ISBN: 978-3-527-31885-8]
  • Tokimatsu T, Sakurai N, Suzuki H and Shibata D (2006) KaPPA-View: A tool for Integrating Transcriptomic and Metabolomic Data on Plant Metabolic Pathway Maps. In Saito K, Dixon RA and Willmitzer L eds, Biotechnology in Agriculture and Forestry, Vol. 57, pp. 155-163, Springer-Verlag, Berlin Heidelberg [ISBN: 978-3540297819]
  • Sakurai N and Shibata D (2006) KaPPA-View for integrating quantitative transcriptomic and metabolomic data on plant metabolic pathway maps. J Pesticide Science, 31, 293-295 [Journal Site]
  • Tokimatsu T, Sakurai N, Suzuki H, Ohta H, Nishitani K, Koyama T, Umezawa T, Misawa N, Saito K and Shibata D (2005) KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. Plant Physiol, 138, 1289-1300 [PID: 16010003]

Researches using KaPPA-View

  • Zhao CR, Sawaki Y, Sakurai N, Shibata D and Koyama H (2010) Transcriptomic profiling of major carbon and amino acid metabolism in the roots of Arabidopsis thaliana treated with various rhizotoxic ions. Soil Science & Plant Nutrition, 56: 150-162
  • Harada H, Fujisawa M, Teramoto M, Sakurai N, Suzuki H, Shibata D and Misawa N (2009) Simple functional analysis of key genes involved in astaxanthin biosynthesis using Arabidopsis cultured cells. Plant Biotechnology, 26: 81-92
  • Nakamura Y, Kimura A, Saga H, Oikawa A, Shinbo Y, Kai K, Sakurai N, Suzuki H, Kitayama M, Shibata D, Kanaya S and Ohta D (2007) Differential metabolomics unraveling light/dark regulation of metabolic activities in Arabidopsis cell culture. Planta, 227: 57-66