| KaPPA-View4 Resources |
| KaPPA-View4 Portal Site |
General information about the KaPPA-View4 system is available here. |
| Outside Systems implement Direct View of the 'Omics' data on KaPPA-View4 |
| MiBASE |
Micro-Tom is one of model tomatos suitable for laboratory usege. MiBASE contributes to collect Micro-Tom data such as genome, EST, transcriptome data and so on. In the view page of gene expressions, they provides a list of Afymetrix Gene Chip data which are publicly available from NCBI GEO. Links to view the Gene Chip data directly on KaPPA-View4 are placed in the list. Click on "view" in the "KaPPA" column of the list. |
| Source of the Data Used in KaPPA-View4 |
| TAIR |
Gene descriptions of Arabidopsis thaliana were retrieved from the TAIR's gene annotation (TAIR9). Assignments of the genes of Lotus japonicus and Solanum lycopersicum to the enzymatic reactions on the pathway maps were done by blastx search against the TAIR9_pep database. |
| RAP-DB |
Gene descriptions of Oryza sativa were accorging to RAP-DB build 5. |
| miyakogusa.jp |
Gene descriptions of Lotus japonicus were obtained from miyakogusa.jp provided by Kazusa DNA Research Institute. |
| Affymetrix |
Target sequences of the probes on the Tomato Gene Chip was obtained from the NetAffx data resource of Affymetrix. |
| ATTED-II |
Gene-to-gene correlation data of Arabidopsis thaliana. |
| MiBASE |
Gene-to-gene correlation data of Solanum lycopersicum (Tomato). |
| CoP |
Significant gene-to-gene correlations evaluated by the Confeito algorithm for Arabidopsis, rice, soybean, barley, poplar, wheat, grape and maize. |
