News
| December 30, 2010 | Web information updated. | |||
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- English manual on User Map Creation was released. - KaPPA-View4 paper was added to Publication. |
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| September 28, 2010 | The policy for counting correlation numbers was changed | |||
In the Bird's Eye view and the control panel for correlation data, total number of the correlation curves are indicated. So far, self correlations (correlation between the same ID) have been included in the count if there were in the data source, but they have never represented on the pathway maps. To avoid a confusion, we changed the counting policy to omit the self correlations even if they were included in the original data. Followings are the data which included self-correlations, so please be careful that the total numbers have changed on these data.
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| August 15, 2010 | Species and Correlation data were modified and added | |||
| - Gene information for Oryza sativa was changed (August 15, 2010). The transcript IDs from RAP-DB have been used for gene IDs of Oryza sativa. We changed the gene IDs of it to the locus IDs from RAP-DB so that the correlation data of rice could be represented. The old settings are preserved as the species name "Oryza sativa [RAP-DB transcript]", so your microarray data described as the transcript IDs can be analyzed with it. The data also can be analyzed in the updated "Oryza sativa" by selecting the array type "(RAP-DB transcript)". - Six Species were added Soybean, barley, poplar, wheat, grape and maize were added so that the correlation data from CoP were represented. The probe IDs from Affymetrix GeneChip were used for the gene IDs - Correlation data were added Correlation data from CoP were added. All the significant co-expressions of the genes evaluated as "Co-expressed genes" in CoP were available. |
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| July 12, 2010 | Correlation data of Solanum lycopersicum was added | |||
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Mutual Rank (MR) data calculated by 50 Affymetrix Tomato Gene Chips (obtained from NCBI-GEO) were kindly provided by MiBASE. Gene-to-gene co-expressions of which MRs were less than or equal to 100 were now available to overlay on the tomato pathway maps. MiBASE also implemented links to KaPPA-View4 to view their Gene Chip data directly on KaPPA-View maps. Click on "view" in the list of the Gene Chip Data. |
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| April 1, 2010 | KaPPA-View2 and 3 were closed | |||
As the all functions of them are implemented on KaPPA-View4 with much better user interfaces, the older versions were closed. |
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| January 5, 2010 | KaPPA-View4 was released | |||
Dramatic improvements of the usabilities of user interfaces and processing speeds have been done. The data posting function enabled to upload the 'omics' data from outside systems. |
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| May 23, 2008 | A bug on correlation representations was fixed | |||
We really apologized to the users because not all of the correlation data had been represented on the pathway maps. Please be careful if you discuss about the correlation representations retrieved from the KaPPA-View system before the fixed day. |
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| March 20, 2008 | KaPPA-View3 was released | |||
Pathway maps for Arabidopsis, rice, lotus and tomato were available. At the maximum of 4 maps were viewed on a single window. The correlation curves were overlayed accross the maps. Users having their own accounts (free) could store their data on the KaPPA-View server. |
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| Novenber 21, 2006 | KaPPA-View2 was released | |||
Gene-to-gene and metabolite-to-metabolite relationships, such as correlation coefficients of gene co-expressions and metabolite co-accumulations were represented as quadratic Bezier curves on the pathway maps. |
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| January 24, 2005 | The initial version of KaPPA-View was released | |||
Changes of transcriptome data and/or metabolome data were represented as color changes on the Arabidopssis metabolic pathway maps. |
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